Package: rdkitpyr 0.2.1
rdkitpyr: Task-Oriented Cheminformatics in R Using 'RDKit' via 'Python'
A task-oriented R interface to the 'RDKit' <https://www.rdkit.org> library through its 'Python' API via 'reticulate'. The package offers high-level cheminformatics functionality, including molecule parsing, descriptor calculation, and fingerprint generation without replicating the native structure of 'RDKit'.
Authors:
rdkitpyr_0.2.1.tar.gz
rdkitpyr_0.2.1.zip(r-4.7-any)rdkitpyr_0.2.1.zip(r-4.6-any)rdkitpyr_0.2.1.zip(r-4.5-any)
rdkitpyr_0.2.1.tgz(r-4.6-any)rdkitpyr_0.2.1.tgz(r-4.5-any)
rdkitpyr_0.2.1.tar.gz(r-4.7-any)rdkitpyr_0.2.1.tar.gz(r-4.6-any)
rdkitpyr_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rdkitpyr/json (API)
| # Install 'rdkitpyr' in R: |
| install.packages('rdkitpyr', repos = c('https://andreysamokhin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/andreysamokhin/rdkitpyr/issues
- test_compounds - Test compounds
Last updated from:498dd846bd. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 134 | ||
| source / vignettes | OK | 165 | ||
| linux-release | OK | 127 | ||
| macos-release | OK | 177 | ||
| macos-oldrel | OK | 187 | ||
| windows-devel | OK | 74 | ||
| windows-release | OK | 66 | ||
| windows-oldrel | OK | 95 | ||
| wasm-release | OK | 82 |
Exports:.IsRdkitAvailableCalculateAllDescriptorsCalculateExactMassCalculateMaccsFingerprintsCalculateMolecularWeightCalculateMorganFingerprintsCalculateRdkitFingerprintsConvertToInchiConvertToInchikeyConvertToSmilesGetPythonInfoParseMolecules
Dependencies:herejsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check whether RDKit is available | .IsRdkitAvailable |
| Calculate all RDKit molecular descriptors | CalculateAllDescriptors |
| Calculate the exact mass of molecules | CalculateExactMass |
| Calculate MACCS fingerprints for a set of molecules | CalculateMaccsFingerprints |
| Calculate the average molecular weight of molecules | CalculateMolecularWeight |
| Calculate Morgan fingerprints for a set of molecules | CalculateMorganFingerprints |
| Calculate RDKit topological fingerprints for a set of molecules | CalculateRdkitFingerprints |
| Convert molecules to InChI strings | ConvertToInchi |
| Convert molecules to InChIKey strings | ConvertToInchikey |
| Convert molecules to SMILES strings | ConvertToSmiles |
| Get information about the currently used Python environment | GetPythonInfo |
| Parse SMILES and InChI strings into RDKit Mol objects | ParseMolecules |
| Test compounds | test_compounds |
